Table 4.
(a) Efficiency, accuracy, and error of microarray resequencing and (b) SNP density in the intervals ± 12 bp surrounding correct and incorrect calls of SNP and constant sites in chimpanzee mtDNA (see table 2 for definitions)
(a) | Correct | Incorrect |
Microarray: | 498 + 432 = 930 | 14 + 1940 = 1954 |
SNP | 3.23 + 2.80 = 6.03% | 0.09+12.56 = 12.65% |
Microarray: | 7290 + 4925 = 12215 | 17 + 336 = 353 |
no SNP | 47.18 + 31.87 = | 0.11 + 2.17 = 2.28% |
7788 + 5357 | 31 (0.20%) errors | |
= 13145 (85.07%) | + 2276 (14.73%) N | |
(b) | Correct | Incorrect |
Microarray: | 4.72, 11.01 | 9.14, 14.57 |
SNP | ||
Microarray: | 3.93, 10.96 | 6.44, 15.48 |
no SNP |